PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000679.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 666aa    MW: 77477.1 Da    PI: 6.6376
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000679.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.51.1e-2356140190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              +fYn YAke GF +r+s+s  +++ +e +++++ Cs+ g+++++  +     ++r+etrtgC a++++k+ ++++w++ ++el+Hn
  Itr_sc000679.1_g00010.1  56 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSNAGFKKKSGAN-----HPRPETRTGCPAMIVIKLVDSKRWRIVEVELQHN 136
                              6*********************999******************9988.....9********************************* PP

                     FAR1  87 Hela 90 
                              H+++
  Itr_sc000679.1_g00010.1 137 HPVN 140
                              *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2156141IPR004330FAR1 DNA binding domain
PfamPF105511.5E-27261354IPR018289MULE transposase domain
PROSITE profilePS509669.483548584IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-6559586IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MEAVSLNSEP VFEDGDEYED EGECTLVEHE NEIHETQKPP LPTVGLEFVS FDEAYDFYNV  60
YAKEQGFGIR VSNSWFRSKR KERYRAKLSC SNAGFKKKSG ANHPRPETRT GCPAMIVIKL  120
VDSKRWRIVE VELQHNHPVN PEIKRFYKSH KKMILAAKQI SQSEPVTEVH TIKLYRTDVV  180
DSPGDSYPEV NERDAGNPVN LSKHLELKDG DSHAVYNYFC RMKLTNPNFF YLMDLDDEGH  240
LRNVFWADAR SRAAYNYFSD IIAIDTTSLT NKYEIPLISF MGVNHHGQSV LLGCGFLGHE  300
SVEHFVWMFK SWLTSMLGRH PQVIVTDQSK PLQTAVSEVF PQARHCYCLS YIMRRVPEKL  360
GGLKGYELIK RQLNKAIYSS LKIVEFESFW REMIVQHGLN DNKWLQLLYE DRHKWVPVYL  420
KDVFSVGMIP IKENESLGAF FDGYVHKHTT FKEFVDRYDL ALQRKHLQEA MADHESQNSV  480
FELKTKCNFE LQLSKVYTKD VFKNFQTEVE GMFSCFHTRQ VSVNGPIMTF VVKERVEVEG  540
GMKEVRQYEV LYETTRMEVR CICSLFNFKG YLCRHALNVL NYNGVEEIPS QYILPRWHRD  600
FKRKFPGDFG LSDIDLDDPA KLYTSLYGRA LQVVEEGAQS QEHYQAVLQE LETLLNKFSI  660
VQDNLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166914.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLM5Y3I60.0M5Y3I6_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s27240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13471970
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6